Package index • jvecfor

KNN search

Exact and approximate k-nearest-neighbour search.

fastFindKNN(): Fast K-Nearest Neighbor Search

Graph construction

KNN and shared-nearest-neighbour graphs for clustering.

fastMakeKNNGraph(): Build a K-Nearest Neighbor Graph
fastMakeSNNGraph(): Build a Shared Nearest-Neighbor Graph

BiocNeighbors backend

Use jvecfor through the BiocNeighbors interface.

JvecforParam() show(<JvecforParam>) buildIndex(<JvecforParam>) findKnnFromIndex(<JvecforIndex>): JvecforParam: BiocNeighbors Parameter Class for jvecfor
JvecforIndex-class: JvecforIndex: BiocNeighbors Index Class for jvecfor

Setup and configuration

jvecfor_setup(): Install a Custom jvecfor JAR
jvecfor jvecfor-package: jvecfor: Fast K-Nearest Neighbor Search for Single-Cell Analysis