fastreeR: Phylogenetic, Distance and Other Calculations on VCF and Fasta Files

Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java-11 and called via rJava. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.

See also

Useful links:

• https://github.com/gkanogiannis/fastreeR

• https://github.com/gkanogiannis/BioInfoJava-Utils

• Report bugs at https://github.com/gkanogiannis/fastreeR/issues

Author

Maintainer: Anestis Gkanogiannis anestis@gkanogiannis.com (ORCID)